NCBI/BLAST

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
Program  
Database
Brachypodium distachyon
MIPS 1.2
Phytozome v8.0
RBFL
RBFL
Genome
Triticum aestivum
UK_454
TriFLDB
Hordeum vulgare
Ensemble Plants release16
Morex
GenBank
NIAS
Genome
Other species
Rice (MSU v7)
Rice (IRGSP-1.0)
Arabidopsis (TAIR10)

Enter sequence below in FASTA format


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NCBI BLAST 2.2.17 [Aug-26-2007]

NCBI/BLAST Algorithm parameters

The query sequence is filtered for low complexity regions by default.
Filter 

Expect    Matrix

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Other advanced options:     


Graphical Overview    Alignment view
Descriptions    Alignments Color schema


NCBI BLAST 2.2.17 [Aug-26-2007]